BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028E01LP1|AL428908
(880 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig591 864 0.0
3x_Contig1766 442 e-124
>3x_Contig591
Length = 1630
Score = 864 bits (436), Expect = 0.0
Identities = 436/436 (100%)
Strand = Plus / Plus
Query: 445 gatatacacacgtgactcgcgaatcaagagatcaaacttctgatattgcattaaaaaaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatatacacacgtgactcgcgaatcaagagatcaaacttctgatattgcattaaaaaaaa 60
Query: 505 actactattttcttgttaggaatatagaaaacaaataatacgtatactatgctaatgcag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actactattttcttgttaggaatatagaaaacaaataatacgtatactatgctaatgcag 120
Query: 565 cattcttccctttttcctgtaactgacaatgcaaagggaacaacagccttgatttgagga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cattcttccctttttcctgtaactgacaatgcaaagggaacaacagccttgatttgagga 180
Query: 625 aatagagcgaacaggataggcaggaatacaccctttacaatcagtctaccgttgcactgt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatagagcgaacaggataggcaggaatacaccctttacaatcagtctaccgttgcactgt 240
Query: 685 gcctctccccttcttatctgacttcatgtatacttattttcgctatatacttgctgtagg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcctctccccttcttatctgacttcatgtatacttattttcgctatatacttgctgtagg 300
Query: 745 tcccgtgatttcgtgtacctcacatcgtacgcatcctggttaacggtgaatgctgcgcct 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcccgtgatttcgtgtacctcacatcgtacgcatcctggttaacggtgaatgctgcgcct 360
Query: 805 tttcaatttctttaccgttttggtatttccaaaaataacaatttctcaacattgaaatta 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttcaatttctttaccgttttggtatttccaaaaataacaatttctcaacattgaaatta 420
Query: 865 ttgaaatttcagttga 880
||||||||||||||||
Sbjct: 421 ttgaaatttcagttga 436
>3x_Contig1766
Length = 23951
Score = 442 bits (223), Expect = e-124
Identities = 296/319 (92%), Gaps = 1/319 (0%)
Strand = Plus / Minus
Query: 1 gatccagccggtcgcaccggngtcatccatccatccagtttttttttttttgagaagaga 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gatccagccggtcgcaccgg-gtcatccatccatccagtttttttttttttgagaagaga 270
Query: 61 atatttgtggagaaaaaaataagaattataggaagcagaaaagatgactaggggagaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atatttgtggagaaaaaaataagaattataggaagcagaaaagatgactaggggagaagc 210
Query: 121 agtggagagaagctatgcctgtgctctgcctggtttttcttaagttttgcttgggttttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agtggagagaagctatgcctgtgctctgcctggtttttcttaagttttgcttgggttttg 150
Query: 181 cgtgctcggcggttaaacgaatgggaaagcttccattaatcctctcggtaccacccggac 240
||||||||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||
Sbjct: 149 cgtgctcggcggttaaacgaatgggcaagcttcaattactcctctcggaacaacccggac 90
Query: 241 agtttttgggaaagtgttctgtacagaaaaaaatcggggttgttacgttatcgagcatac 300
| ||||| |||||||||| ||| ||| | ||||||||||| |||||||| | ||||
Sbjct: 89 aatttttaggaaagtgttatgtgcagggacccctcggggttgtttcgttatcgcgaatac 30
Query: 301 aaccctggaggggagaaga 319
| ||| || |||| |||||
Sbjct: 29 accccaggtggggtgaaga 11
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,190
Number of Sequences: 1807
Number of extensions: 14190
Number of successful extensions: 149
Number of sequences better than 1.0e-20: 2
length of query: 880
length of database: 10,358,551
effective HSP length: 16
effective length of query: 864
effective length of database: 10,329,639
effective search space: 8924808096
effective search space used: 8924808096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)